Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs72670231 | chr4:119312908 | C/T | 1.87E-12 | 399 | 17.67 | 18.15 | 1.38 | KM Plot |
| BLCA | rs72670248 | chr4:119335536 | A/C | 1.03E-12 | 399 | 17.4 | 20.33 | 1.38 | KM Plot |
| BLCA | rs72670249 | chr4:119336823 | G/T | 1.03E-12 | 399 | 17.4 | 20.33 | 1.38 | KM Plot |
| BLCA | rs72670250 | chr4:119337134 | T/C | 1.03E-12 | 399 | 17.4 | 20.33 | 1.38 | KM Plot |
| BLCA | rs72670252 | chr4:119337546 | A/C | 1.03E-12 | 399 | 17.4 | 20.33 | 1.38 | KM Plot |
| BLCA | rs73118071 | chr4:16275303 | A/G | 3.14E-6 | 397 | 17.03 | 19.17 | 10.82 | KM Plot |
| BLCA | rs7319514 | chr13:97515052 | C/T | 4.6E-6 | 399 | 18.17 | 15.17 | 37.5 | KM Plot |
| BLCA | rs733300 | chr5:131572243 | A/G | 2.08E-6 | 395 | 19.27 | 19.45 | 14.13 | KM Plot |
| BLCA | rs7499607 | chr16:8705664 | C/T | 3.29E-6 | 405 | 17.4 | 20.6 | 7.5 | KM Plot |
| BLCA | rs75126351 | chr13:25847557 | T/C | 2.19E-8 | 402 | 17.77 | 18.13 | 5.13 | KM Plot |
| BLCA | rs75290152 | chr13:25840496 | T/A | 4.1E-8 | 404 | 17.87 | 17.53 | 5.13 | KM Plot |
| BLCA | rs75471208 | chr12:123306558 | G/A | 4.82E-8 | 405 | 17.87 | 16.13 | 2.7 | KM Plot |
| BLCA | rs75616385 | chr12:70527056 | G/C | 7.83E-6 | 398 | 17.87 | 17.07 | 3.1 | KM Plot |
| BLCA | rs75622091 | chr10:133942234 | CCTA/C | 5.19E-6 | 395 | 11.47 | 17.87 | 18.95 | KM Plot |
| BLCA | rs76614962 | chr13:25829370 | T/C | 4.1E-8 | 404 | 17.87 | 17.53 | 5.13 | KM Plot |